![]() ![]() Previous version using all 0 to 100 PUBCHEM_ACTIVITY_SCORE raw scores: pubchem_protein_only_01_11_2016.sqlite (7.As of April 2016 we now include raw numeric scores from a data column other than the 0 to 100 PUBCHEM_ACTIVITY_SCORE if there is an available column matching the following regex (case insensitive): "inhibition|ic50|ki|gi50|ec50|ed50|lc50".Īn attempt was made to parse all assay data as accurately as possible, however users should double check the accuracy of data critical to their experiments. ![]() If duplicate CIDs are contained within a single assay (such as multiple SIDs) only one is kept under no specific criteria. Sequence level protein target clustering was done with kClust using the command line options "-s 0.52 -c 0.8 -e 1.0e-4 -M 16000MB". Domain data for target proteins is based on a HMMER 3.1b2 search using Pfam version 29.0 with the options "hmmscan -E 0.01 -domE 0.01 -cpu 8 -noali". How to Do Case-Insensitive Comparisons in SQLite Daniyal Hamid 3 years ago 4 min read In this article, we'll have a look at different ways of doing a case-insensitive string comparison in SQLite. Yes You can in fact do this in some flavors, using what is called embedded modifier. Sqlite, PostgreSQL), others are case-insensitive (SQL Server, MySQL). For one thing, databases vary considerably in how they handle text for example, while some databases are case-sensitive by default (e.g. These can be accessed using the "translateTargetId()" function in bioassayR with the category option "UniProt", "kClust", or "domains" respectively. Text processing in databases can be complex, and requires more user attention than one would suspect. Three types of annotation details are provided for protein targets: sequence level clustering (via kClust), Pfam domains, and UniProt identifiers. This database contains all small molecule bioactivity screens from NCBI PubChem BioAssay which include at least one real activity score (active or inactive) and have a specified protein target. ICU extension Choosing the right python function for case-insensitive comparison 2. custom collate) instead, if it is possible in my case.BioassayR Database Downloads Database Description This approach seems to be satisfying, but I wanted to get the elegant solution (i.e. The best lead I have so far would be to create a custom column without accents as described here. However, I haven't seen a single written example achieving this kind of accent/case insensitive search. I guess that it's a common issue considering the number of related questions.It is similar to LIKE, except that it interprets the pattern using a regular expression. net application? Can I embed my custom collation in the database to avoid to create it each time? The SIMILAR TO operator returns true or false depending on whether its pattern matches the given string. I have read the SQLite documentation on the creation of a custom collation but I don't really get it. ![]() TestString = testString.Replace("Œ", "œ") The regex build: Dim testString As String = word.Replace("A", "") I cover collations in chapter 2 and ay collocation unit tests tests all the string commands (, Equals, StartsWith, EndsWith, Contains, IndexOf and the SQL. Return .IsMatch(Convert.ToString(args(1)), Convert.ToString(args(0))) SQL server is default setting case-insensitive SQLite is a mixture of case-sensitive and case-insensitive I would suggest you use PostgreSQL as your example of case-sensitive Detail. Public Overrides Function Invoke(args As Object()) As Object You can restrict case insensitive search in MongoDB with the help of regex. Since I am looking for another solution, I'll wait for answers instead of fixing it. SQLite is an open source SQL database that stores data to a text file on. Is that correct? EDIT: this approach doesn't work. I assume it will be faster than my REGEXP function defined in my VB.net code (see code below). If you want only part of the regex to be case insensitive (as my original. Nearly all regex engines support it: /G a-b./i string.match ('G a-b.', 'i') Check the documentation for your language/platform/tool to find how the matching modes are specified. I noted that it is possible to create a custom collation to achieve that but I don't know where to start and what to expect in terms of performance: Assuming you want the whole regex to ignore case, you should look for the i flag. ![]() For instance, when I search for "VOILA", I want to match "voilà". I am trying to avoid using a regexp function when I need to match strings regardless to their accent or case. ![]()
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